F Nadiya Nadiya

3 Questions 11 Answers 0 Followers

Questions related from F Nadiya Nadiya

How to assign COG functional categories to KOG protein IDS?

I have done KOG annotation (using blastx) using my de novo assembled transcripts. I got the protein ids for each transcripts. Can any one suggest how should i categorize them to the functional...

01 July 2016 4,948 3 View

Can I use MIRA denovo assembler for reference transcriptome creation?

I have my RNA seq data (non model plant) from ion torrent. Now i am running MIRA for transcriptome assembly. Can we run the assembler with more biological replicates for reference transcript...

08 February 2016 5,608 4 View

How do I check the quality of TRINITY assembled transcriptome data?

I have my plant RNA seq data (single end) from ion proton and not provided whether the data is strand specific or not. For denovo assembly using TRINITY if the SS lib type is not specified in the...

10 December 2015 415 13 View