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Questions related from Dileep Vijayan
I wanted to calculate the RMSD of overall protein and RMSF per residues. I have several proteins downloaded from the PDB (not snapshots of MD simulation). Can any one suggest me the scripts for...
07 July 2018 2,719 3 View
I have a protein obtained through ab initio modeling. I would like to know whether this protein is exhibiting any kind of structural similarities with other proteins available in the PDB. How I...
10 October 2017 7,062 5 View
I am trying to design multi-target directed ligands. I have found some similar common ligands for both proteins. When I docked these ligands I have seen the score is almost similar. But these...
03 March 2017 4,042 2 View
Is it a good idea to compare the b factor of a particular loop of different proteins from same family? I have seen that these proteins are having similar orientation of loops.
12 December 2016 3,965 3 View
I am working on DNA crystallography. Recently l have collected one data from Synchrotron, Grenoble, France. We are unable to process the data. It was noted that the phi angles of the images are...
03 March 2016 7,212 3 View
