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Questions related from Dileep Vijayan
Hi all, Can any one please suggest me a tool or web server or a script for calculating the root mean square fluctuation for side chain, back bones and all atoms. The protein/DNA structures are...
13 March 2018 7,304 5 View
I have a protein obtained through ab initio modeling. I would like to know whether this protein is exhibiting any kind of structural similarities with other proteins available in the PDB. How I...
02 October 2017 7,167 4 View
I would like to superimpose few quadruplex structures available in the PDB. These structures are either in complexes with proteins or available in free form. The structures are not with similar...
02 October 2017 603 4 View
Can any one please tell me where the amyloid beta aggregations (plaques) are depositing? I mean which part of the brain we can find more amyloid plaques? Do anyone have papers on that? I couldn't...
22 May 2017 6,058 3 View
Hello friends. As a part of one work, I have done molecular docking to explain the in vitro results. I have confirmed the ligand - protein interaction through ITC, Spectrophotometer and enzyme...
12 May 2017 1,328 16 View
Can anyone please tell me from where I can download all FDA approved drugs in SDF format or in smileys format? I have used drug bank and found majority of the approved drugs are not included in...
21 March 2017 6,823 21 View
I am trying to design multi-target directed ligands. I have found some similar common ligands for both proteins. When I docked these ligands I have seen the score is almost similar. But these...
09 March 2017 1,986 2 View
Is it a good idea to compare the b factor of a particular loop of different proteins from same family? I have seen that these proteins are having similar orientation of loops.
19 December 2016 3,095 3 View
