Debashruti Das

6 Questions 9 Answers 0 Followers

Questions related from Debashruti Das

How to save and reload a matrix having both strings and numeric in R so that the first column and row retain the sample names and the number values ?

I have created a data matrix from a CSV file In R. But whenever I try saving the data matrix in .RData format or CSV format and reload it again, the "is.numeric(data_matrix) returns FALSE. the...

21 February 2024 6,253 5 View

How to merge .info files?

PLINK 1.9 has recently started generating .info and .ped files (needed as input in Haploview software) per chromosome from bfiles. The command being used in "plink--bfile --recode HV --out ". Is...

01 August 2023 3,213 0 View

Why can't I run --fisher with --assoc on PLINK 1.9?

I have been trying to generate .assoc file with the Fisher exact test parameter. But PLINK 1.9 is returning the error shown in the picture. I cannot figure out what is going wrong. Glad if...

01 August 2023 3,951 1 View

Why is DNAsp6 showing this error?

Everytime I try to load this unphased fasta file, DNAsp ver 6 is showing this error. can anybody help me understand what is wrong?

05 January 2023 8,957 1 View

How to interpret data in .arp file?

Hey, I am working in population genetics. I used DNAsp to convert fasta into .arp file for input in Arlequin. Can anyone help to interpret the data in the .arp file? As in which column represents...

13 October 2020 8,508 9 View

Difference in allele frequency from different softwares

HI all, I had computed allele frequency from Arlequin and also tried to match it with the MAF generated through Haploview. There is unexplainable difference in both the frequencies. I would like...

01 January 1970 5,957 2 View