Danko Gombos

3 Questions 2 Answers 0 Followers

Questions related from Danko Gombos

What functional group on a ligand could non-covalently interacts with sulfur on methionine aa.?

I am looking for a functional group that could contribute to the binding of a ligand targeting methionine residue. If anyone could give me a suggestion and probably a practical example would be...

25 May 2019 6,403 2 View

Can I fix part of the ligand to interact with the protein receptor while leave the rest flexible for docking?

I am currently trying to do molecular docking with some software that I have accessibility. The crystal structure of targeted protein has already been published with an occupied inhibitor....

21 April 2017 1,738 6 View

Which command should I use to do stuctural comparison on a protein binding with different ligand?

I have some crystal structures of a protein bound to different ligands. There are 2 commands in pymol to do the structural comparison, align and super. I wonder which one should I use in order to...

14 February 2017 7,738 1 View