Ayah N. Al-Bzour

3 Questions 1 Answers 0 Followers

Questions related from Ayah N. Al-Bzour

How to handle large seurat objects (5GB+) in R?

I have integrated 11 seurat objects that I need to merge before downstream analysis, I combined the first 4 (2.6GB total) and saved them as an rds object just fine but every time I combine the...

23 November 2022 1,774 3 View

How to map Affymetrix probes from microarray data into gene symbols or IDs for Clariom_S_Human annotation?

I have microarray data from Affymetrix Clariom S Assay, Human chips, I read the .cel files but when I do the RMA normalization I get the following error: " Error in getCdfInfo(object) : Could...

20 September 2022 5,560 1 View

How to perform a Differentially methylated regions analysis (DMRs/DMC) using GenomicRationSet?

I want to find the differentially methylated regions between two groups of samples, I have a dataset containing the beta values for each sample mapped to each gene and the corresponding grouping...

25 July 2022 8,856 0 View