Arunabh Athreya

3 Questions 17 Answers 0 Followers

Questions related from Arunabh Athreya

How to make a HMMM bilayer through gromacs?

Hi I have been trying to make a HMMM bilayer through CHARMM-GUI but since the protein of interest is a well spread one, with certain domains being intrinsically disordered, I had to make a box 20...

18 September 2021 4,912 2 View

What's the expected free energy change in conformational transition of a transporter?

Hi I have been trying to optimize well-tempered metadynamics simulation in Gromacs 2020.4 engine using plumed, on a transporter from Major Facilitator Superfamily. I have the existing structure...

22 May 2021 3,758 2 View

What is sequence of origin of replication needed in a plasmid to propogate in Staphylococcus aureus or staphylococcus epidermidis?

Can a plasmid that expresses in Staphylococcus aureus also express in Staphylococcus epidermidis? Also, what are the common vectors used in S. epidermidis for protein expression?

24 November 2017 3,390 1 View