Arunabh Athreya

2 Questions 15 Answers 0 Followers

Questions related from Arunabh Athreya

How to make a HMMM bilayer through gromacs?

Hi I have been trying to make a HMMM bilayer through CHARMM-GUI but since the protein of interest is a well spread one, with certain domains being intrinsically disordered, I had to make a box 20...

18 September 2021 4,828 2 View

What's the expected free energy change in conformational transition of a transporter?

Hi I have been trying to optimize well-tempered metadynamics simulation in Gromacs 2020.4 engine using plumed, on a transporter from Major Facilitator Superfamily. I have the existing structure...

22 May 2021 3,671 2 View