Aqib Sarfraz

6 Questions 12 Answers 0 Followers

Questions related from Aqib Sarfraz

What is Trace value in PCA analysis using GROMACS?

Hellp all, Recently i have successfully run the GROMACS coomand for PCA analysis of protein-ligand complex. But, there are plenty of publication indicated "Trace value" in thier result. I also...

03 April 2023 9,981 0 View

Why i am getting not promising MMGBSA result.?

Hello everyone, i hope you all are doing well, I have performed docking study with some selected molecules along with the reference inhibitor and the docking results were for selected two...

31 January 2023 7,410 1 View

What is best QMEAN score in homology modelling..?

Hello all, hope you guys are doing well, i performed a homology modelling for a protein strucutre using SWISS-MODEL server. Onces the modelling is finished the result wizard of SWISS-MODEL...

09 June 2022 8,412 0 View

How to run RSEM to generate a count matrix in ubuntu 20.4 ?

Dear all, hope you all are doing well, I have assembled the transcriptome data of Tagetes erecta Leaf (SRR7641101) and Tagetes erecta flower (SRR7641100) by using Trinity assembler. Now I want to...

16 November 2021 4,227 1 View

How to do genome-guided Trinity transcriptome assembly..?

Hello all, hope you guys are doing well, I have transcriptome data of Nicotiana tabacum and its genome file is available on NCBI, so I have done their alignment with reference genome with the help...

25 October 2021 724 1 View

How to identify Bowtie2 index output file in paired end data..?

Dear all, I have paired-end raw reads of Nicotiana tabacum (SRA: SRR9191672) and their reference genome which is available on NCBI. so after fetching the data, i decided to map the reads with...

27 September 2021 6,509 3 View