Anurag Dobhal

3 Questions 3 Answers 0 Followers

Questions related from Anurag Dobhal

Gromacs : solvating one half of the molecule in one solvent and other half in another solvent ?

I am working on a biphasic system where I have two solvents in the box i.e. water and chloroform. I want to solvate my protien in a manner sush that half of its portion is covered in water and...

09 September 2016 5,249 4 View

How to determine how much polymer has been converted into nano-particles ?

I am preparing PLGA nano-particles by nano-precipitation method I am dissolving PLGA in acetone (organic phase) and then adding organic phase in water containing stabilizer and homogenizing the...

14 February 2016 2,232 6 View

How can I make changes in the .rtp files already existing in the gromacs force field directories?

I want to simulate a RNA molecule in which first residue has a 5'-PO4 cap, which is uncommon. I want to add atom and bond parameters in the .rtp files but the changes are not getting saved. How...

28 September 2014 7,846 4 View