Ali Reza Eivazi

5 Questions 10 Answers 0 Followers

Questions related from Ali Reza Eivazi

Is there any correlation between mature miRNAs and their precursors?

I have a series of RNA-seq datasets that their average spot length is about 90bp. (don't include small RNA reads like mature miRNAs). I'd like to do "Gene" and "precursor miRNAs" expression...

08 December 2020 7,840 3 View

How to analyze expression of genes using R or galaxy project?

I have more than 500 Datasets of RNA-sequencing data (both FASTA and FASTQ format) and I'd like to analyze gene expression and differentially expressed genes. files with FASTA format are in my PC...

15 July 2020 3,538 3 View

How can I predict targets for a list of miRNAs (in Turkey) using most reliable target predictor programs?

Several articles reports that three target predictor Target Scan, Miranda and PicTar have predicted highest percentage of experimentally validated miRNA targets, but when I looked at their...

16 September 2015 8,141 4 View

How can I determine how many reads are there in a small RNA sequencin experiment?

For example, I want to know how many reads are there in this experiment available at NCBI SRA database: ERX242531.Thanks in advance

12 July 2015 3,766 12 View

How can I extract the most differently expressed genes from a microarray dataset?

I want to extract breast cancer differently expressed genes from microarray dataset available at "http://www.ncbi.nlm.nih.gov/geo/". I downloaded dataset from Gene Expression Omnibus (GEO) and the...

15 June 2014 7,707 10 View