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Questions related from Abubakar Siddiq Ibrahim
've set up an initial configuration of my system using a triclinic box in AMBER MD. However, I'm currently unsure how to perform solvent evaporation. Specifically, I'd like to gradually remove...
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Hello, I used PyTraj to plot a Ramachandran plot for a protein, but the plot contains so many residues that it’s difficult to analyze. Is there a more straightforward way to interpret the plot and...
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Hello, I am new to computational chemistry. I am working on a project that requires that I attach ctma molecules to the phosphate groups of DNA molecule in AMBER MD. Is the a way I can do this...
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