I am doing a stain for myelin using Eriochrome Cyanine (Solochrome Cyanine). The counterstain is a neurofilament stain visualized using DAB. I am working from 45 micron sections of brain tissue. After the DAB step to finish the neurofilament stain, I wash in distilled water, then incubate for 8 minutes in acetone. After the acetone, I do 4 rinses with distilled water for 3 minutes each time, after which I stain in Eriochrome Cyanine for 30 minutes.
The last few times I have run the protocol, there have been patches of tissue where the Eriochrome Cyanine dye does not impregnate; these patches on the tissue appear white instead of dark purple/blue like the stained sections. This issue persists through the rest of the protocol, and there are parts of the tissue on the finished slides where myelin is definitely present but was not stained blue (i.e. the corpus callosum).
Has anyone had this issue? I am thinking maybe there is water preventing the stain from impregnating or something similar. Thanks.