Fatal error:

Atom HD1 in residue HIS 822 was not found in rtp entry HSE with 17 atoms while sorting atoms.

For a hydrogen, this can be a different protonation state, or it

might have had a different number in the PDB file and was rebuilt

(it might for instance have been H3, and we only expected H1 & H2).

Note that hydrogens might have been added to the entry for the N-terminus.

Remove this hydrogen or choose a different protonation state to solve it.

Option -ignh will ignore all hydrogens in the input.

I also Followed the suggestion to using -ignh in the code but it give me this error:

Fatal error:

Atom OXT in residue VAL 961 was not found in rtp entry VAL with 16 atoms

while sorting atoms.

Would anyone please help me? I can't concentrate on my studies unless I solve them.