What is the difference between a BWA-ALN and BWA_MEM allignment?

Saikat Bandyopadhyay @Saikat_Bandyopadhyay

01 January 2017 1 4K Report

What are the major advantages and disadvantages of both of these algorithms? is there any better option available?

Firoz Ahmad

http://bio-bwa.sourceforge.net/

https://www.biostars.org/p/117225/

Badges
Science topic

More Saikat Bandyopadhyay's questions See All

I need an algorithm by which I can run a number of certain tools in a sequence in a automated manner?

I have a set of bioinformatics tools. Now I want to execute them one by one in a automated sequence where data (output ) generated by one tool will be used as an input in the next tool. I am new...

31 December 2016 4,493 4 View

Is there any method to reverse (normalize ) the misence mutations acquired over time?

The DNA acquires mutation over the replication cycles, and once one mutation is propagated then that never gets fixed. Can we develop a method to reverse that process? as de differentiation of...

08 September 2016 4,634 4 View

How to use evolutionary algorithms with real parameters in ryu sdn controller with large scale?

Hi, I wanna to implement evolutionary algorithms in ryu sdn controller in mininet, i have some challenges, how i can run the big scale topo with one sdn contoller??? and another question is to...

21 July 2024 246 2 View

How can I begin quantum computing on my computer or laptop?

I am interested in designing, developing, and testing algorithms on my laptop or local machine. Do I require any specialized quantum hardware or an online quantum computing service? Is it possible...

10 June 2024 2,917 3 View

Where can I find a reliable(peer reviewed) source code for the QKD BB84 protocol?

I'm trying to implement BB84 on a network, however I don't have a source code that is backed by any organization or a peer reviewed paper. Any help would be appreciated. Thanks!

09 June 2024 5,786 1 View

How are surrogates integrated in evolutionary algorithms?

I am interested in understanding how surrogates are effectively integrated into evolutionary algorithms (EAs). Specifically, I would like guidance on how to handle the approximation function when...

08 May 2024 2,579 0 View

How do quantum algorithms, such as quantum support vector machines or quantum neural networks, differ from their classical counterparts?

25 March 2024 2,307 1 View

How do quantum algorithms, such as quantum support vector machines or quantum neural networks, differ from their classical counterparts?

25 March 2024 4,842 1 View

What is the most effective method for fine-tuning PID controllers, including techniques like Ziegler-Nichols, Genetic Algorithms (GA),PSO, ACO,WOA ?

Which tuning method is optimal for adjusting PID controller parameters, such as Ziegler-Nichols (ZN), Genetic Algorithms (GA), Particle Swarm Optimization (PSO), Ant Colony Optimization (ACO), and...

18 March 2024 5,283 1 View

How can i calculate the Levy flight on Monarch Butterfly Optimization Algorithm?

Hi all! I am implementing the Monarch Butterfly Optimization Algorithm in Java in order to schedule tasks on VMs. How can I calculate the Lévy flight for updating the butterflies in subpopulation...

13 February 2024 3,194 0 View

How to solve quadratic programming problems with continuous variables by using Qiskit quantum algorithms?

i solve this classical optimization using docplex . The requirement is that I need to solve it with quantum algorithms. For solving QUBO problems, I could use QAOA. But for solving quadratic...

24 January 2024 1,645 2 View

What is the gold standard ratio for phenotype:healthy control for EHR phenotyping?

Hello! I am working on a proposal for creating an electronic health record phenotyping classification algorithm (mental health focus). I am having a hard time finding solid guidance re:cohort...

17 January 2024 8,856 2 View