I am collecting questionnaire data in an epidemiological study from large numbers of participants (>1000). What is the best data management system/software for: data entry, data validation and data checking?
There are a number of good packages out there. SAS is my personal preference. It has a wide range of data management tools, and you can document all edits and created variables in the code for future reference.
"Best" is relative and depends largely on what your requirements are in terms of resources, study data and your data collection method. Have a look at REDCap and Epi Info for data entry and validation. They both contain some basic functionality for data cleaning.