The alphafold 2 uses channels in pairwise representation for protein residues. But why are they used? Shouldn't there be only one value, not a cannel array?
The pairwise representation has shape (r,r,c). Why is it like that? Shouldn't it be (r,r)
I have got the reason. Here the channels represents various features.
"I am encountering challenges in using TiCl4 as a dopant due to its insolubility in water. Can anyone provide recommendations or methods for achieving its dissolution in water for the synthesis of...
04 December 2023 7,284 0 View
When we compare structure of two proteins, their is the notion of Z Score.
31 May 2022 553 1 View
Can I get some papers related to TM-Score for protein folding?
21 May 2022 8,445 1 View
While finding out TM-Scores of CASP14 target T1055, I have noticed that the TM score is different from the results given in CASP14 archives. So, the structure that was used to evaluate T1055 in...
18 January 2022 7,272 2 View
In prediction center website a specific format of target PDBs are given. I want to convert structure from www.wwpdb.org to CASP14 prediction center compatible PDB file.
17 January 2022 151 1 View
Transfer learning seems to be widely used for the convolutional layers of neural networks architectures. But for fully connected layers I haven't seen It used. Can you point to me research where...
31 December 2021 6,563 3 View
I have long term data set for Tmax, Tmin and Tavg
10 December 2018 4,568 3 View
The political participation of the Kirat Rai community in Nepal has evolved significantly over time: Historical Context Historically, the Kirat Rai people, like many indigenous groups in Nepal,...
05 August 2024 5,949 1 View
Hello, I am currently analyzing some phosphoproteomics data, but I have peptides with multiple phosphorylation sites or phosphorylations together with carbamidomethylation or oxidation. How can I...
04 August 2024 8,432 3 View
When we conduct linear regression, there are several assumptions. The assumption of normality is whether the residual errors are normally distributed, not whether a predictor is normal?
31 July 2024 6,162 3 View
I wanted to know whether we can observe the synergistic/antagonistic/additive properties of combinations or mixtures of compounds through docking analysis. But during docking preparation any...
28 July 2024 7,413 6 View
Kao's panel cointegration tests , is there anyone willing to explain me the eviews-9 output for the Kao's panel cointegration tests?
23 July 2024 5,051 4 View
For a partition of an integer \lambda, what does the difference \lambda_j - \lambda_{j+1} represent in relation to the conjugate partition, , with \lambda_j being the j-th element of \lambda?
23 July 2024 8,007 1 View
I want to express STK4, and I've searched the paper for reference. When I check the protein kinase domain sequence for that kinase on Uniprot, it's 30-281, but the paper expresses the protein...
20 July 2024 4,951 1 View
I have made an unpleasant discovery that I seemed to use these terms incorrectly. 'Alluvial' seems to mean "out of the river channel", flood-plain' etc. While all these cross-bedded...
15 July 2024 2,072 3 View
Hi! I am currently working on a protein where I have selected residues within 10A of its bound ligand in pymol. However, I can not find a way to print out what residues are contained in that group...
15 July 2024 1,725 1 View
Jarosite is obtained from bioleaching residue and I want to determine if there are increased active sites biogenic jarosite compared to chemical synthetic jarosite.
10 July 2024 8,130 2 View