I was using Protege 5 beta 17 platform independent, everything was okay, until I tried to open a very large ontology, then it froze and never responded.
When I open Protege again, it gives the DOT error, for graphvis, and then freezes and never respond.
I tried everything from uninstall/reinstall/different versions of Protege including 5 beta for windows, 4.2 and 4.3, the same problem/reinstalling java the same problem/installing protege with its own java the same problem.
What is the problem/solution?
Thanks
The log says
INFO Cajun Visualization Plugin Plugin has no plugin.xml resource org.protege.editor.core.ProtegeApplication[FelixDispatchQueue]
INFO OWLAPI-RDF Library Plugin has no plugin.xml resource org.protege.editor.core.ProtegeApplication[FelixDispatchQueue]
INFO Using OWL API version 3.4.2 org.protege.editor.owl.OWLEditorKit[FelixDispatchQueue]
INFO Rebuilding entity indices... org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO ... rebuilt in 4 ms org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO Setting active ontology to OntologyID(OntologyIRI()) org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO Rebuilding entity indices... org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO ... rebuilt in 1 ms org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO ... active ontology changed org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO Cannot generate ontology catalog for ontology at http://www.semanticweb.org/hilal/ontologies/2016/2/untitled-ontology-22 org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO Setting active ontology to OntologyID(OntologyIRI()) org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO Rebuilding entity indices... org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO ... rebuilt in 1 ms org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]
INFO ... active ontology changed org.protege.editor.owl.model.OWLModelManagerImpl[FelixDispatchQueue]