I am currently working on tomato fruit quality, doing QTL mapping and fine mapping of genes involved in volatile pathways. The volatile quantification is generally performed by our collaborator, using a GC-FID instrument. Now I am considering to implement the quantification in my department, but using HS-SPME-GC-MS. I am mainly interested in relative values, for each experiment I will be comparing two groups (two genotypes) and I need to be confident enough about whether they are different or not. Do you think that SPME and GC-MS are accurate enough to do so? Thanks in advance.

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