I am trying to submit the MD production phase job on BRAF C-DAC server for which I have compiled newer version of Gromacs (5.1.2) through my login. I can also use old version of Gromacs 4.5.6 which is preinstalled on BRAF server. With both versions I am unable to submit the jobs through the pbs script-
#! /bin/bash
#PBS -l nodes=3:ppn=12
#PBS -N GROMACS:xxxx
#PBS -q braf
#PBS -j oe
#PBS -k oe
#PBS -V
cd $PBS_O_WORKDIR
export I_MPI_DEVICE=rdma
/home/apps/ics/impi/latest/bin64/mpiexec.hydra /home/braf/md/gromacs-4.5.6/bin/mdrun_mpi -deffnm md_10
or
/home/apps/ics/impi/latest/bin64/mpiexec.hydra /home/braf/md/gromacs-4.5.6/bin/gmx_mpi mdrun -deffnm md_10
The error in user input occurs.
Kindly help in solving this issue.