In order to calculate Mean Square displacement, for an organic molecule containing 29 atoms, how to define fix npt and fix langevin?
You may use the following link:
http://lammps.sandia.gov/doc/fix_nh.html#fix-npt-command
Thank you very much. In the link (which you had sent)
https://redmine.scorec.rpi.edu/anonsvn/lammps-cuda/tools/msi2lmp/biosym_frc_files/cvff.frc
Can we get the dihedral coefficient for dihedral_style opls? If not, how do we arrive at it?
Yes, you can use OPLS forcefield, OPLS is the base of all forcefields.
In that link, opls co-efficients are not mentioned. Where do we get the co-efficients?
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