Hello,
I performed 20ns simulation of a protein using Gromacs 5.1. I want to plot DSSP plot of simulated protein for specific residues. I created index file using following command.
gmx make_ndx -f f.gro -o A.ndx
But when i used the above ndx file in DSSP command. I dont see desired residues secondary structure plot.
Can anybody please let me know how to do it.
Thanks,
Sai