Hello,

I performed 20ns simulation of a protein using Gromacs 5.1. I want to plot  DSSP plot of simulated protein for specific residues. I created index file using following command. 

gmx make_ndx -f f.gro -o A.ndx

But when i used the above ndx file in DSSP command. I dont see desired residues secondary structure plot.

Can anybody please let me know how to do it.

Thanks,

Sai

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