Hello, I need to merge two fastq files, which belong to two flowcell, one file has 71 ind and the other 96, so in total they are 167 ind. How can I merge them? I'm analyzing the cyverse data with UNEAK.
Thanks in advance!
Do you have access on a unix environment? Then simply:
cat file1.fastq file2.fastq > mergedfile.fastq
I agree with Richard A. Schäfer.
To prevent sample mix-ups I would first demultiplex the fastq files and then merge fastq's per sample.
thank you! It works!
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