By definition the total Mulliken charge (meaning the sum of partial Mulliken charges on all atoms of the system) has to be equal to the total charge of the system. E.g. if you have a neutral (non-charged) molecule like H2O the total Mulliken charge has to be and is always zero.
If you want to check it (no idea why though) the easiest way would be to add manually Mulliken partial charges from the text output file of your qm software.