https://www.ncbi.nlm.nih.gov/pubmed/2742854

I am following the method of Graminski in the paper above. Whether GSH is protonated or not may be followed with absorbance spectroscopy at 239 nm. To determine the pKa of GSH, I follow the protonation or deprotanation of GSH over the pH range of 5-11.  I then repeated the experiment in the presence of certain proteins to see what effect they have.

Calculating the pKa of GSH free in solution was no problem. The problem comes when I have to repeat the experiment in the presence of proteins. I am supposed to correct the Spectra for the absorbance that would otherwise be caused by just the protein or free GSH in solution. This however is impossible as in my case, the absorbance of free GSH is higher than my readings for protein+GSH together. 

Have I misunderstood something?

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