I have RNA-Seq data of piglets' small intestine, I want make sure about the sex of the animals. I therefore need to know if there is a tool or command line to used in Linux which can identify whether the sample is a female or male? I appreciate your time in advance
Serafino Augustino,
You should definitely check Samtools:
http://www.htslib.org/download/
https://support.bioconductor.org/p/73186/
http://seqanswers.com/forums/showthread.php?t=63360
Article Indexcov: Fast coverage quality control for whole-genome sequencing
Hope that helps.
you can download third party simulator software to determine the value of animals. Make predictions also as well.
Firas Khalil Khana and Adnan Majeed, many thanks for your time and your answers, very much appreciated. I am definitely going to try these suggestions .
- Badges
- Science topic
- Similar topics
- Filing