Hello everyone,

I have conducted a MD simulation on a RNA tetra-loop in GROMACS. I have place the molecule in a large box to regenerate gas phase conditions. Now I need to convert the final .gro file to a .xyz file. The xyz coordinates look a little different probably due to the fact that I have conducted this simulation in a very large box. If anyone has faced a similar situation and knows a solution please let me know. I highly appreciate that!