I am running docking by using Autodock 4.2 software. However, I am not able to run autodock at the final stage and this type of command error appears in the terminal,
Unknown ligand atom type "atotypin"; add parameters for it to the parameter library first!
Autodock 4.2 runs without errors for similar ligands but this error is seen with ligands having Br and Cl groups.
I edited the autodock parameters tool, But still I faced current problem
Hello...
Add these parameters to the AD4_parameters.dat file and then initiate the docking
atom_par Br 4.33 0.389 42.5661 -0.00110 0.0 0.0 0 -1 -1 4 # Non H-bonding
atom_par Cl 4.09 0.276 35.8235 -0.00110 0.0 0.0 0 -1 -1 4 # Non H-binding
Regards
Sir, I added these parameters, but this line was already there in the dat file, Iam still getting the ERROR " Edit the parameter library file "AD4.1_bound_br.dat",
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