When I run grompp in gromacs to generate tpr file, I get this error :"Group referenced in the .mdp file was not found in the index file.".
These are my .mdp file and my index.ndx file. This is my command:
$gmx grompp -f md2-1.mdp -c nvt.gro -n index.ndx -t nvt.cpt -p topol.top -o md2.tpr -maxwarn 2
Could anyone give me some help? Thank you so much!