I was trying to assess Arhaea in my sample but the results are very low (8*10^0, 1,7*10^2). I am wondering whether this result should be recognized as "not detected" or not.
Statistically, you're detection limit is in 4-10 targets by reaction, below 4 copies by reaction you have 50% likelihood of have 0 targets. Other different factors can impact in your detection limit as your PCR efficiency, the DNA purification procedure and the efficiency of bacteria recovery from your sample.
On the other hand depending your PCR setup, you must to take some care in order to be sure that PCR signals at high Ct are true amplifications
How was your definition of detection obtained? How do you incorporate PCR efficiency, the DNA purification procedure and the efficiency of bacteria recovery in your determination of detection limit? How do you ensure your PCR setup is appropriate to apply the detection limit?
Does ratio of Base pairs of amplified and original sample greater than x can help. If x is say >10 or 100 or 1000 or so. It's interesting to know about minimum measurable limit. What is conservative value of x at which pcr surely did the job. I think 1000 is OK.