In my research I have 5 SNPs that predicted to have consequences on the protein, 2 exotic in the coding regions, 2 in 5'UTR that predicted to affect TF binding site and one intronic SNP predicted to create a splice donor site.
Next, I want to do expression study to validate the effect of each SNP. My question is what type of experiment I can do for each type of SNP (exotic, 5'UTRs and the intronic SNP)?
Thank You.