Hello users,

I am using Tk-console to remove water molecules from inside the complex of CNT and encapsulated residue. My problem is when i am following http://chembytes.wikidot.com/yasc-vmd#toc0 script i am not getting any output file. when i am giving the fragment number, orientation, radius there is the the warning like  "Warning: file overwriting is not prevented!"

what is the meaning of this exactly? after that when i m giving the .ndx file nothing is there. after command W its showing :

12:49:31 up 21 days,  2:11,  6 users,  load average: 0.23, 0.29, 0.25 USER     TTY      FROM             LOGIN@   IDLE   JCPU   PCPU WHAT user     :0       :0               01Jan13 ?xdm?  12:17m  1.66s /sbin/upstart --user user     pts/1    :0               Thu12   48:33   1:18   0.00s /usr/bin/w

what is the meaning of this? and how can i solve this? As it is urgent for me

Thank you in advance

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