How can I dock Cis and Trans isomers separately into a specific receptor? is there any procedure?

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Ropón-Palacios G.

You can generate both isomers using Babel o draw it using babel.

Dmitri Kireev

Just treat them as two different compounds.

Sana Waris

Does autodock vina has option to differentiate between cis and trans isomer?

Also which software can be use dto generate cis and trans isomers of compounds?