I have a gromacs trajectory and I want to monitor the folding and stability of a certain helix in my protein, how can I do that?
I tried to use DSSP through gromacs in version 2020.3, however on converting to post script (.eps format), I get unclear image without labels, I tried to use timeline plugin in VMD, however it gives an error saying "cannot use geometry manager pack inside".
Any suggestions are highly appreciated!