I used gmx trjconv -b 100000 -e 150000 -f wild_nopbc.trr -s NPT_wild_0_eq.tpr -pbc mol -o wild_100ns_150ns.trr to get equilibrated trajectory over 50 ns from 100 ns to 150 ns. Is there any way to get the exact coordinates of my system at 100 ns (The starting point of my equilibrated trajectory).
Tasneem Kausar
if you want a pdb file then this will work
gmx trjconv -b 100000 -e 100000 -f wild_nopbc.trr -s NPT_wild_0_eq.tpr -pbc mol -o wild_100ns_out.pdb
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Mangesh Damre
Dear Roshan,
With above suitable answers, you may also try to use VMD.
It will also convenient to save the coordinates in multiple file formats.
http://ambermd.org/tutorials/basic/tutorial2/section7.htm
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