FIrst you need to know the overall charge and oxidation state of your Fe-centers (like +2 or +3). Then if you replace one Fe atom with a Na atom (neutral) there must be a residual negative charge in your system.
Since you are asking about the overall charge for the input file, Fe12O12 is neutral, so it is reasonable to assume that the Fe atoms are in the +2 state (on average). You replace one with Na, which can only be in the +1 state. So you will be left with [Fe11O12Na]-. The input charge is -1. Your spin state will depend on the initial spin state which, in turn, depends on the geometry. See Article Competition between surface chemisorption and cage formation...