I guess that any chromatography data system (suitable for MS data) should be able to handle these files. I usually export into this format, so I assume you can also import it, although I haven´t done that.

If you are looking for free software to analyse your data, you can try OpenChrom (tried it a long ago and it was a bit difficult to adjust to my needs) or AMDIS (if you are only interested in qualitative results).

This is the most useful go-to page I know of for mass spectrometry software: http://www.ms-utils.org/wiki/pmwiki.php/Main/SoftwareList

Bookmark that page!

See if some of the tools in the second group "data visualization and analysis", where netCDF is mentioned a few times, fit your needs.

R (free statistical software) and MATLAB (not necessarily free) also have capabilities to handle netCDF files so you can browse the packages available.

All the best!

I suppose this software meets all your needs (https://www.openchrom.net/)

It is an open source software

Best Regards

Another possibility is to use MZMine, which is open source also and has  highly customizable analsysis functions. As a drawback, you must know what you want or how the different methods work in order to get best results.

If you have specific questions, please contact me.

Best regards, Moritz

Thank you everyone

Hi everyone,

I also have a problem.

I have two column ASCII file of TOF mass spectral data. Column first is TIME and second column is INTENSITY.

I converted ASCII file format to NETCDF format using python script. I am not sure if the conversion is correct or not.

Now I want to import this file into AMDIS or Open CHROME. But both softwares gives an error message, "unable to read the file".

I d'nt understand what to do.

I am attaching here my datafile in ascii and the converted netcdf format. Also attached is the python program.

Please help.

Thanks,

Nozair

Hello!

I'm trying to plot a chromatogram in .SMS format. I've tried some programs and all the others. TXT or .CSV or some other ASCII file. Please, does anyone know of any software that can open this kind of file in .SMS?

Thanks!