I am now approaching to the neurophatological analysis. I have to detect differences in microglial morphology in brain slices stained in IHC. The aim is to distinguish microglial cells with different shapes and dimension with major objectivity. Is there a free software that can do that?
You can trace dendrits or axons with neuronstudio.
Also i've heard about imorph for 3D analyse
Good luck
Neuromantic http://www.reading.ac.uk/neuromantic/body_index.php
NeuTube http://www.neutracing.com/
these are very quick and easy to use. Neuromantic has a semi-automatic tracing mode and works on both old and new OS. NeTube requires a 64bit system and can trace dendritic processes much faster (but you might have to correct eventual mistakes manually of course)
There is also an ImageJ plugin https://imagej.net/Simple_Neurite_Tracer
but is not as ready to use as these stand alone softwares.
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