Studying the computer and communication networks in terms of Graph structures is one of the fields of current interest. In this direction Graph algorithms are investigated to get deep into the topic of interest.
Please catch a glimpse of https://dx.doi.org/10.1016/S0304-3975(98)00206-0
Sir, if I understand you, you need a software to studynetworks as graphs. There are many softwares for this, such as, gephi. Second, most of the studies study computer networks as undirected graphs.
Monitoring tools for analyse the computer data communication networks you can use
NetFlow Analyzer MenageEngine.
You can download it on internet for free. And you can use for monitoring 2 interfaces free licence.
Link for demo graph.
http://demo.netflowanalyzer.com/netflow/apiclient/ember/index.jsp#/Home/Dashboard/Top 10/5
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