Can you program gaps as a fifth character state in PopART?

15 November 2019 1 3K Report

Can you program gaps as a fifth character state in PopART.? I cannot see any way to do this. I am interested in creating haplotype networks for mitochondrial genes with very slow mutation rates were a single amino acid insert/deletion is crucial.

Does anyone recommend any other software if this cannot be done in popART?

Manoswini Dash

I am also looking for some ways to include the indel data in PopArt to assign haplotype. Did you find any solution?

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