What is the best practice to perform LEFSe? In qiime2 or transforming qiime2 object into LEFse obejct?
There is a tool. However, it easy to error. https://github.com/gblanchard4/qiime_to_lefse Might you have better suggestion?
Hi Wang,
I think you can retrive .biom files from QIIME2 and use it for making the input file for LEFSe, try LEFSe from huttenhower galaxy server.
Best Wishes,
Pankaj
Thanks
You're welcome
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