If you are asking about the possibility - not necessarily whether it is done:
YES - within the limitations regarding multi-path propagation and additional reflections due to water layers originating in different levels of salinity.
Yeah, surely multi-path propagation and additional reflections from UW layers would make it difficult to compute the angle. The problem will be much more in shallow water rather than deep water.
I want to know whether any such real-life implementation is done or whether there are any research article on finding the AoA?