Group Protein referenced in the .mdp file was not found in the index file.
Group names must match either [moleculetype] names or custom index group
names, in which case you must supply an index file to the '-n' option
of grompp.
use the command gmx make_ndx
Thankyou , i tried its working
follow this:
Code GROMACS (CHARMM)
Code GROMACS (AMBER)
thankyou anwesh for the help
i am gonna try this.
is the script that you have shared, needs to be run by direct submission or it is a perl script ?
Shivani Gupta direct submission
using gmx make_ndx
Refer to this website to make an index file using GROMACS http://manual.gromacs.org/archive/5.0.4/programs/gmx-make_ndx.html
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