Can any one suggest software for protein-protein docking (free for academic institution)?

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Anuraj Nayarisseri

Try any following tools

standalone

Vina, PMV , PyRx, Chimera, Autodock tools etc

Online servers

Zdocking http://zdock.umassmed.edu/

HDOCK http://haddocking.org/

Firedock http://bioinfo3d.cs.tau.ac.il/FireDock/

cluspro http://cluspro.bu.edu/login.php

Patchdock http://bioinfo3d.cs.tau.ac.il/PatchDock/

Best!!

Riya Rane

HEX is a freely available software used for protein protein docking.

Harshavardhan Khare

You could try rosetta package. Online server is also available

http://rosie.rosettacommons.org/docking2

Using standalone software might be too elaborate and time consuming.

Mohsen Yazdani

HEX is free software. but i think dock servers like HDOCK is better

Reetesh Kumar

https://www.youtube.com/watch?v=LKbd6qKiSYY&index=2&list=PLQLtIQhMOBQ7QVRZKtbZfw5KqNSqg6FTG

M. Shahnawaz Khan

There are many software available for free to download. Hex is a free software which is very easy to handle apart from this Audo dock vina is also very good option to illustrate protein-protein docking.