Zaki Saati Santamaría

3 Questions 11 Answers 0 Followers

Questions related from Zaki Saati Santamaría

Any tool or program for bacterial GSEA (GOEA) with non standard gene IDs?

I have a list of prokaryotic genes and I will annotate them with GO terms. Nevertheless, because of the characteristics of my dataset, I do not have gene IDs. So, I would like to perform GSEA,...

16 April 2020 4,572 0 View

How to improve the mapping of a transcriptome to a genome?

I have a dual transcriptome of a bacteria and its host, a plant. I identified a preliminar assembly of the reads and it matches with our bacteria (70%) and the plant (30%). After that, I used...

02 September 2019 921 4 View

How could I link some transcriptomic contigs to a bacterial genome?

On the one hand, I have a bacterial draft genome, on the other hand I have contigs assembled from transcriptomic reads. I also have the predicted protein-coding sequences of the transcriptomics...

04 April 2019 8,092 3 View