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In order to investigate the process of entering a protein into a cavity of a MOF, I used SMD, In the direction of the z-axis, the protein has entered the cell and exited from the other side. I...
20 January 2023 3,629 2 View
I want to simulation cytochrome C that it has two parts HEME and protein. I have charmm files par_heme.pdf and top_heme.pdf heme group but I do not know how to convert pdf file to *. inp because...
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I want simulation cytochrome C with Gromacs package and CHARMM force field , I am using CHARMM GUI for produce .itp and .top file for cytochrome C but output file by CHARMM GUI two amino acids...
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