Wondossen Ayalew

4 Questions 1 Answers 0 Followers

Questions related from Wondossen Ayalew

Variant filtration of WGS in cattle has validated SNPs?

I am working on cattle genomics and now, I am looking for a validated cattle SNPs used for VQSR approach in GTAK. Is there any validated cattle SNPs? If not, am I suppose to use a separate vcf...

24 May 2023 4,630 1 View

Why is GATK4.3 give inconsistent outputs?

When I run ApplyBQSR two of my samples generate all the chromosome lists and then MT. For the other samples that came from a similar pipeline, MT is not available in the list. Surprisingly, the...

23 February 2023 6,772 0 View

How can I fix the error that trimmomatic did not find the adapter file?

I am having a problem getting trimmomatic to find the adapter file. I have tried all the options I can think of for the path but still get a file not found error message. And still, it gives me an...

22 October 2022 5,804 0 View

I would like to send the DNA to a sequencing company without ice & it will take 15 to 20 days. Is there any mechanism to keep its stability?

I have genomic DNA with the TIANGEN DNA extraction kit. I would like to send the DNA to a sequencing company without ice or other temperature stabilizer and it will take 15 to 20 days. Is there...

17 March 2022 2,929 1 View