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I am confused about the copy number variation. I only have SNPs data from illumina SNPs arrays. I can use many tools to detection the CNV. But I want to know is for example, a family CNV...
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I am try to merge many dataset from the published raw data. I am sure that they were generated from the same type of SNP chip. When I convert ped/map files to vcf. I found out they were not the...
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