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Questions related from Vishal Pandya
I would like to validate a homology model. After peroforming MD simulation, one way is to check the stereochemical quality, Ramachandran plot, dssp, B-factor, etc and map the model with the...
26 July 2018 7,431 10 View
I would like to set the default background in vmd as gradient. Therefore I tried the following method to set default background gradient in ~/.vmdrc file but that did not work. Could anyone please...
09 June 2018 6,615 2 View
I have installed VMD 1.9.2 on Ubuntu machine and when I try to change the representation from lines to cartoon the GUI becomes very slow and one can feel like VMD is not working. It does not slow...
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Suggestions regarding Protonation prediction servers apart from H++., PDB2PQR and Reduce!
26 May 2017 1,696 3 View
How to screen database of natural compounds based on 3d structure of that molecule? I have one compound which has been modified but its backbone structure is indenone, So can I go further in order...
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