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Questions related from Vijay Manickam Achari
I am trying to calculate lateral lipid diffusion via simulation in the xy direction . The method I used to calculate the diffusion is by calculating the gradient or slope of plot of MSD (mean...
13 August 2014 7,013 2 View
I would like to calculate Hydrogen Bonding (HB) interaction from simulation a simulation. Let's say I have two molecules (molecule A and molecule B) with several OH groups in each molecule. At...
10 July 2014 8,660 10 View
I would like to calculate auto-correlation function for tilt angle for the lipids in a bilayer from molecular dynamic simulation. I have the angles for all lipids from each frames for all...
02 May 2013 2,981 11 View
In X-ray study, normally the bilayer repeat distance is determined (shown as D in this paper (Nagle, J.F. and S. Tristram-Nagle, Lipid bilayer structure. Current opinion in structural biology,...
23 March 2013 5,343 1 View