Vignesh S R

3 Questions 7 Answers 0 Followers

Questions related from Vignesh S R

How to make an amino acid side-chain stapling for performing simulations via GROMACS?

Dear All, I want to make a side-chain stapling of lysine (or its non-standard amino acid derivatives). How to make a topology file for this kind of side-chain stapling (I believe, it is not...

20 October 2023 8,235 2 View

Membrane Thickeness using GridMAT-MD?

Hello All, I want to perform drug-membrane interaction studies using Gram-negative bacterial membranes. I used CHARMM-GUI to model asymmetric mixed membranes with Lipid A in the upper leaflet and...

24 September 2021 4,422 3 View

Forcefield for Gamma amino acids compatible with GROMACS?

Hello all, I want to simulate Gamma amino acids using GROMACS, if anybody know where to get the forcefield parameters for gamma amino acids , kindly direct me .. Thanks in advance.

04 September 2021 8,609 5 View